Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| BLCA | rs79565603 | chr1:103143521 | G/A | 0 | 212 | 8.98 | 15.17 | 2.07 | KM Plot |
| BLCA | rs7974856 | chr12:58391839 | A/C | 1.49E-10 | 216 | 2.27 | 7.9 | 9.45 | KM Plot |
| BLCA | rs7991112 | chr13:21024275 | C/G | 4.28E-5 | 216 | 2.07 | 13.12 | 9.43 | KM Plot |
| BLCA | rs801626 | chr22:47171543 | G/A | 1.1E-5 | 208 | 10.1 | 9.05 | 4.07 | KM Plot |
| BLCA | rs8022406 | chr14:51357386 | G/T | 3.37E-5 | 216 | 10.12 | 5.85 | 0 | KM Plot |
| BLCA | rs8028363 | chr15:83246886 | T/C | 3.41E-8 | 212 | 9.95 | 8.5 | 1.35 | KM Plot |
| BLCA | rs8053746 | chr16:533052 | G/A | 2.17E-8 | 213 | 9.95 | 6.8 | 2.12 | KM Plot |
| BLCA | rs8089069 | chr18:5243540 | T/C | 4.22E-8 | 215 | 9.08 | 12.43 | 4.73 | KM Plot |
| BLCA | rs8091750 | chr18:5241170 | C/T | 3.99E-5 | 210 | 9.1 | 12.57 | 3.48 | KM Plot |
| BLCA | rs8092760 | chr18:5241500 | A/T | 3.99E-5 | 210 | 9.1 | 12.57 | 3.48 | KM Plot |
| BLCA | rs859709 | chr1:208033037 | A/G | 1.41E-5 | 216 | 3.3 | 9.47 | 9.62 | KM Plot |
| BLCA | rs861840 | chr22:22010623 | G/A | 3.61E-7 | 214 | 8.58 | 12.58 | 5.33 | KM Plot |
| BLCA | rs861843 | chr22:22007528 | C/G | 4.05E-7 | 213 | 8.47 | 12.58 | 5.33 | KM Plot |
| BLCA | rs883332 | chr16:85994724 | C/T | 7.62E-6 | 216 | 2.28 | 5.37 | 10.12 | KM Plot |
| BLCA | rs933767 | chr8:5898095 | G/T | 0.000104 | 216 | 6.2 | 8.53 | 10.12 | KM Plot |